BRIDGE:结合双聚类与集成惩罚回归的阿尔茨海默病影像基因组学统计框架
A statistical framework for integrative imaging genomics with biclustering and ensemble penalized regression in Alzheimer’s disease
研究提出 BRIDGE 统计框架,将稀疏双聚类与集成惩罚逻辑回归结合,用于整合基因表达与脑功能连接数据。依据摘要,方法分三步:用稀疏精度矩阵估计个体脑功能网络、用稀疏双聚类数据驱动发现基因表达特征与脑连接共同变化的调控模块、再通过降维与集成惩罚逻辑回归做疾病分类和生物标志物识别。
Imaging genomics provides a powerful paradigm for decoding the complex interplay between molecular variation and brain functional phenotypes in neurodegenerative disorders. In this study, the molecular modality is specifically gene expression data rather than time-invariant genetic variants. However, statistically integrating these high-dimensional modalities remains challenging, as existing methods often rely on incomplete biological priors or overlook the latent modular structure of the data. To address this, we propose BRIDGE (Biclustering and ensemble penalized Regression for Integrative Data in Genomics and nEuroimaging), a unified statistical framework that synergistically integrates biclustering with ensemble penalized regression. Our approach proceeds in three interdependent stages: (1) accurate estimation of individual brain functional networks via sparse precision matrices; (2) data-driven discovery of regulatory modules - defined as subsets of gene expression features co-varying with subsets of brain connections - using a sparse biclustering algorithm; and (3) stable disease classification and biomarker identification via dimensionality reduction integrated with an ensemble penalized logistic regression model. Simulation studies demonstrate that BRIDGE outperforms ablation variants of the proposed framework and external competing benchmark methods in both feature selection performance and classification accuracy. In an application to the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort, the framework achieved robust out-of-sample classification performance and uncovered biologically interpretable disease-related modules. These results highlight BRIDGE as a rigorous tool for integrative imaging genomics, capable of identifying pathogenic factors without reliance on a priori knowledge.
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来源:NeuroImage · sciencedirect.com